PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_9ACF2EAB6.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 357aa    MW: 40963.2 Da    PI: 8.2978
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_9ACF2EAB6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.1e-152903463286
                            --SEEEEEE.TTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                     B3  32 esktltled.esgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                            +  ++tl++ e+++sWev+      ++s++   lt+GWk F+k+n+Lk+gD+++Fk+++
  Traes_5AL_9ACF2EAB6.2 290 C--KITLKSvERNKSWEVEGVNyhPGTSRSyNCLTRGWKAFCKENELKAGDICTFKVVN 346
                            3..7999998999******94446444444689***********************654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.247176IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-53576IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-63676IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-5100195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-6101194IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.034145197IPR003340B3 DNA binding domain
SMARTSM010190.0042265357IPR003340B3 DNA binding domain
CDDcd100172.43E-12278343No hitNo description
SuperFamilySSF1019362.94E-13279354IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-14281354IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-12289354IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321291357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
ACWVLWYRRS WRRADGPRSQ SVRQECLACX XXXXXGAFLG DGWPQFVAAH GIGVGWYLVI  60
RHEGCGVLTL KAFDASFVIK EFGLTITVLS PAEIENAFAR KPQFIVPLQR SFMEKMPIPP  120
EFLQRGYISE EDLNRPRPIA TFLTSWHIEL KKDGPNVFFT GSEWPKFLAY FEIAETDVLL  180
IKYQGCMNFS FETFQNGNNE HIEEKTSSSQ QSEQSPGAQS QEEEHVCSRK RKQSEVKSML  240
DGSTTSQHRK KALCELGSTG SQAWLRKEIN ELALKRYLHF PARFGFLERC KITLKSVERN  300
KSWEVEGVNY HPGTSRSYNC LTRGWKAFCK ENELKAGDIC TFKVVNSTLW HVVIDHC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW5EZS40.0W5EZS4_WHEAT; Uncharacterized protein
STRINGMLOC_28796.51e-123(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.15e-07B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]